1. Genetic encoding of chemical post-translational modification for phage-displayed libraries, Inventors: Ratmir Derda, Pavel Kitov, Simon Ng, Katrina Felicia Tjhung, Daniel Ferrer Vinals, Patent number: US 10724034B2, Date: July 28, 2020
  2. Genetically-encoded macrocyclic peptide libraries bearing a pharmacophore“, Inventors: Ratmir Derda, Raja MUKHERJEE, Arunika EKANAYAKE, Patent number: WO2020107118A1, Date: June 4, 2020
  3. Genetically-encoded bicyclic peptide libraries“, Inventores: Ratmir Derda, Raja MUKHERJEE, Vivian TRIANA, Patent number: WO2020019072A1, Date: Janurary 30, 202
  4. Disply of molecules on silently genetically encoded nanoscale carriers for determining synergistic molecular interactions, Inventors: Ratmir Derda, Nicholas Bennett, Susmita Sarkar, Patent number: US20190352636A1, Date: November 21, 2019
  5. Method of quantifying peptide-derivative libraries using phage display“, Inventors: Ratmir Derda, Simon Ng, Seyed Mohammadreza JAFARI, Patent number: CA2861137A1, Date: August 8, 2013
  1. “Genetically-encoded discovery of proteolytically stable bicyclic inhibitors for morphogen NODAL“, Jeffrey Y.-K. Wong, Raja Mukherjee, Jiayuan Miao, Olena Bilyk, Vivian Triana, Mark Miskolzie, Antoine Henninot, John J. Dwyer, Serhii Kharchenko, Anna Iampolska, Dmitriy M. Volochnyuk, Yu-Shan Lin, Lynne-Marie Postovit, Ratmir Derda, Chem. Sci., 2021, Advance Article, DOI: 10.1039/D1SC01916C 
  2. ‘”Genetically Encoded Fragment-Based Discovery from Phage-Displayed Macrocyclic Libraries with Genetically Encoded Unnatural Pharmacophores, Arunika I. Ekanayake, Lena Sobze, Payam Kelich, Jihea Youk, Nicholas J. Bennett, Raja Mukherjee, Atul Bhardwaj, Frank Wuest, Lela Vukovic, and Ratmir Derda, Journal of the American Chemical Society 2021 143 (14), 5497-5507, DOI: 10.1021/jacs.1c01186
  3. Combining biological and chemical diversity“, Heinis, C. Combining biological and chemical diversity. Nat. Chem.13, 512–513 (2021). DOI: 10.1038/s41557-021-00722-1
  4. Genetically-Encoded Discovery of Proteolytically Stable Bicyclic Inhibitors of Morphogen NODAL“, Wong, Jeffrey Y. K.; Mukherjee, Raja; Bilyk, Olena; Miao, Jiayuan; Triana, Vivian; Miskolzie, Mark; et al. (2021), ChemRxiv. Preprint. DOI:10.26434/chemrxiv.13870592.v1 
  5. Genetically encoded multivalent liquid glycan array displayed on M13 bacteriophage“, Sojitra, M., Sarkar, S., Maghera, J. et al. Nat Chem Biol (2021). DOI: 10.1038/s41589-021-00788-5
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